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anti tal1  (Santa Cruz Biotechnology)


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    Structured Review

    Santa Cruz Biotechnology anti tal1
    The LDB1 complex containing LMO2 and GATA1 directly enhances the transcription of the Bcl11a gene. ( A-E ) ChIP-qPCR assays were performed to assess the occupancy of putative LDB1 complex component proteins, including LDB1, LMO2, GATA1, <t>TAL1,</t> and E2A, at the Bcl11a locus in E14.5 WT and KO FLCs. n = 3. Control, isotype control Ab; LDB1, anti-LDB1 Ab; LMO2, anti-LMO2 Ab; GATA1, anti-GATA1 Ab; <t>TAL1,</t> <t>anti-TAL1</t> Ab, E2A, anti-E2A Ab; WT, E14.5 FLCs; KO, E14.5 KO FLCs. Statistical significance was assessed by one-way ANOVA with Tukey HSD analysis. Mean values not sharing the same superscript letter ( a, b ) differ significantly at P < 0.05. ( F and G ) Dual-luciferase reporter assays were performed using the 210 bp region covering primer #3 ( Bcl11a intron #3) or the 225 bp region covering primer #4 ( Bcl11a intron #4) at Bcl11a locus. The relative luciferase activity of each construct containing either Bcl11a intron #3 or Bcl11a intron #4 was measured in HEK293T cells transfected with the indicated combination of each expression vector encoding Ldb1 , Lmo2 , or Gata1 cDNA. The schematic diagrams of each cloned enhancer region ( F ) and the results of the luciferase reporter assays ( G ) are presented. Ldb1 , expression vector encoding Ldb1 cDNA; Lmo2 , expression vector encoding Lmo2 cDNA; Gata1 , expression vector encoding Gata1 cDNA; ◯, transfected cells; ☓, untransfected cells. n = 5. Statistical significance was assessed by one-way ANOVA with Tukey HSD analysis. Mean values not sharing the same superscript letter ( a, b, c ) differ significantly at P < 0.05. ( H and I ) ChIP-qPCR assays were performed to assess LDB1 occupancy at the human BCL11A locus in K562 cells. The locations of each indicated primer set within the BCL11A locus are shown in the schematic diagram ( H ) along with the corresponding ChIP-qPCR results ( I ). n = 3. Mock K562, empty vector transfected K562 cells; KO K562, human LDB1 knockout K562 cells; Control, isotype control Ab; LDB1, anti-LDB1 Ab. Statistical significance was assessed by two-tailed Student's t -test. ∗ P < 0.05. All data are presented as the mean ± SEM.
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    Images

    1) Product Images from "LDB1 represses fetal hemoglobin expression by enhancing BCL11A transcription"

    Article Title: LDB1 represses fetal hemoglobin expression by enhancing BCL11A transcription

    Journal: Redox Biology

    doi: 10.1016/j.redox.2026.104070

    The LDB1 complex containing LMO2 and GATA1 directly enhances the transcription of the Bcl11a gene. ( A-E ) ChIP-qPCR assays were performed to assess the occupancy of putative LDB1 complex component proteins, including LDB1, LMO2, GATA1, TAL1, and E2A, at the Bcl11a locus in E14.5 WT and KO FLCs. n = 3. Control, isotype control Ab; LDB1, anti-LDB1 Ab; LMO2, anti-LMO2 Ab; GATA1, anti-GATA1 Ab; TAL1, anti-TAL1 Ab, E2A, anti-E2A Ab; WT, E14.5 FLCs; KO, E14.5 KO FLCs. Statistical significance was assessed by one-way ANOVA with Tukey HSD analysis. Mean values not sharing the same superscript letter ( a, b ) differ significantly at P < 0.05. ( F and G ) Dual-luciferase reporter assays were performed using the 210 bp region covering primer #3 ( Bcl11a intron #3) or the 225 bp region covering primer #4 ( Bcl11a intron #4) at Bcl11a locus. The relative luciferase activity of each construct containing either Bcl11a intron #3 or Bcl11a intron #4 was measured in HEK293T cells transfected with the indicated combination of each expression vector encoding Ldb1 , Lmo2 , or Gata1 cDNA. The schematic diagrams of each cloned enhancer region ( F ) and the results of the luciferase reporter assays ( G ) are presented. Ldb1 , expression vector encoding Ldb1 cDNA; Lmo2 , expression vector encoding Lmo2 cDNA; Gata1 , expression vector encoding Gata1 cDNA; ◯, transfected cells; ☓, untransfected cells. n = 5. Statistical significance was assessed by one-way ANOVA with Tukey HSD analysis. Mean values not sharing the same superscript letter ( a, b, c ) differ significantly at P < 0.05. ( H and I ) ChIP-qPCR assays were performed to assess LDB1 occupancy at the human BCL11A locus in K562 cells. The locations of each indicated primer set within the BCL11A locus are shown in the schematic diagram ( H ) along with the corresponding ChIP-qPCR results ( I ). n = 3. Mock K562, empty vector transfected K562 cells; KO K562, human LDB1 knockout K562 cells; Control, isotype control Ab; LDB1, anti-LDB1 Ab. Statistical significance was assessed by two-tailed Student's t -test. ∗ P < 0.05. All data are presented as the mean ± SEM.
    Figure Legend Snippet: The LDB1 complex containing LMO2 and GATA1 directly enhances the transcription of the Bcl11a gene. ( A-E ) ChIP-qPCR assays were performed to assess the occupancy of putative LDB1 complex component proteins, including LDB1, LMO2, GATA1, TAL1, and E2A, at the Bcl11a locus in E14.5 WT and KO FLCs. n = 3. Control, isotype control Ab; LDB1, anti-LDB1 Ab; LMO2, anti-LMO2 Ab; GATA1, anti-GATA1 Ab; TAL1, anti-TAL1 Ab, E2A, anti-E2A Ab; WT, E14.5 FLCs; KO, E14.5 KO FLCs. Statistical significance was assessed by one-way ANOVA with Tukey HSD analysis. Mean values not sharing the same superscript letter ( a, b ) differ significantly at P < 0.05. ( F and G ) Dual-luciferase reporter assays were performed using the 210 bp region covering primer #3 ( Bcl11a intron #3) or the 225 bp region covering primer #4 ( Bcl11a intron #4) at Bcl11a locus. The relative luciferase activity of each construct containing either Bcl11a intron #3 or Bcl11a intron #4 was measured in HEK293T cells transfected with the indicated combination of each expression vector encoding Ldb1 , Lmo2 , or Gata1 cDNA. The schematic diagrams of each cloned enhancer region ( F ) and the results of the luciferase reporter assays ( G ) are presented. Ldb1 , expression vector encoding Ldb1 cDNA; Lmo2 , expression vector encoding Lmo2 cDNA; Gata1 , expression vector encoding Gata1 cDNA; ◯, transfected cells; ☓, untransfected cells. n = 5. Statistical significance was assessed by one-way ANOVA with Tukey HSD analysis. Mean values not sharing the same superscript letter ( a, b, c ) differ significantly at P < 0.05. ( H and I ) ChIP-qPCR assays were performed to assess LDB1 occupancy at the human BCL11A locus in K562 cells. The locations of each indicated primer set within the BCL11A locus are shown in the schematic diagram ( H ) along with the corresponding ChIP-qPCR results ( I ). n = 3. Mock K562, empty vector transfected K562 cells; KO K562, human LDB1 knockout K562 cells; Control, isotype control Ab; LDB1, anti-LDB1 Ab. Statistical significance was assessed by two-tailed Student's t -test. ∗ P < 0.05. All data are presented as the mean ± SEM.

    Techniques Used: ChIP-qPCR, Control, Luciferase, Activity Assay, Construct, Transfection, Expressing, Plasmid Preparation, Clone Assay, Knock-Out, Two Tailed Test



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    Santa Cruz Biotechnology anti tal1
    The LDB1 complex containing LMO2 and GATA1 directly enhances the transcription of the Bcl11a gene. ( A-E ) ChIP-qPCR assays were performed to assess the occupancy of putative LDB1 complex component proteins, including LDB1, LMO2, GATA1, <t>TAL1,</t> and E2A, at the Bcl11a locus in E14.5 WT and KO FLCs. n = 3. Control, isotype control Ab; LDB1, anti-LDB1 Ab; LMO2, anti-LMO2 Ab; GATA1, anti-GATA1 Ab; <t>TAL1,</t> <t>anti-TAL1</t> Ab, E2A, anti-E2A Ab; WT, E14.5 FLCs; KO, E14.5 KO FLCs. Statistical significance was assessed by one-way ANOVA with Tukey HSD analysis. Mean values not sharing the same superscript letter ( a, b ) differ significantly at P < 0.05. ( F and G ) Dual-luciferase reporter assays were performed using the 210 bp region covering primer #3 ( Bcl11a intron #3) or the 225 bp region covering primer #4 ( Bcl11a intron #4) at Bcl11a locus. The relative luciferase activity of each construct containing either Bcl11a intron #3 or Bcl11a intron #4 was measured in HEK293T cells transfected with the indicated combination of each expression vector encoding Ldb1 , Lmo2 , or Gata1 cDNA. The schematic diagrams of each cloned enhancer region ( F ) and the results of the luciferase reporter assays ( G ) are presented. Ldb1 , expression vector encoding Ldb1 cDNA; Lmo2 , expression vector encoding Lmo2 cDNA; Gata1 , expression vector encoding Gata1 cDNA; ◯, transfected cells; ☓, untransfected cells. n = 5. Statistical significance was assessed by one-way ANOVA with Tukey HSD analysis. Mean values not sharing the same superscript letter ( a, b, c ) differ significantly at P < 0.05. ( H and I ) ChIP-qPCR assays were performed to assess LDB1 occupancy at the human BCL11A locus in K562 cells. The locations of each indicated primer set within the BCL11A locus are shown in the schematic diagram ( H ) along with the corresponding ChIP-qPCR results ( I ). n = 3. Mock K562, empty vector transfected K562 cells; KO K562, human LDB1 knockout K562 cells; Control, isotype control Ab; LDB1, anti-LDB1 Ab. Statistical significance was assessed by two-tailed Student's t -test. ∗ P < 0.05. All data are presented as the mean ± SEM.
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    Santa Cruz Biotechnology isotype control
    The LDB1 complex containing LMO2 and GATA1 directly enhances the transcription of the Bcl11a gene. ( A-E ) ChIP-qPCR assays were performed to assess the occupancy of putative LDB1 complex component proteins, including LDB1, LMO2, GATA1, <t>TAL1,</t> and E2A, at the Bcl11a locus in E14.5 WT and KO FLCs. n = 3. Control, isotype control Ab; LDB1, anti-LDB1 Ab; LMO2, anti-LMO2 Ab; GATA1, anti-GATA1 Ab; <t>TAL1,</t> <t>anti-TAL1</t> Ab, E2A, anti-E2A Ab; WT, E14.5 FLCs; KO, E14.5 KO FLCs. Statistical significance was assessed by one-way ANOVA with Tukey HSD analysis. Mean values not sharing the same superscript letter ( a, b ) differ significantly at P < 0.05. ( F and G ) Dual-luciferase reporter assays were performed using the 210 bp region covering primer #3 ( Bcl11a intron #3) or the 225 bp region covering primer #4 ( Bcl11a intron #4) at Bcl11a locus. The relative luciferase activity of each construct containing either Bcl11a intron #3 or Bcl11a intron #4 was measured in HEK293T cells transfected with the indicated combination of each expression vector encoding Ldb1 , Lmo2 , or Gata1 cDNA. The schematic diagrams of each cloned enhancer region ( F ) and the results of the luciferase reporter assays ( G ) are presented. Ldb1 , expression vector encoding Ldb1 cDNA; Lmo2 , expression vector encoding Lmo2 cDNA; Gata1 , expression vector encoding Gata1 cDNA; ◯, transfected cells; ☓, untransfected cells. n = 5. Statistical significance was assessed by one-way ANOVA with Tukey HSD analysis. Mean values not sharing the same superscript letter ( a, b, c ) differ significantly at P < 0.05. ( H and I ) ChIP-qPCR assays were performed to assess LDB1 occupancy at the human BCL11A locus in K562 cells. The locations of each indicated primer set within the BCL11A locus are shown in the schematic diagram ( H ) along with the corresponding ChIP-qPCR results ( I ). n = 3. Mock K562, empty vector transfected K562 cells; KO K562, human LDB1 knockout K562 cells; Control, isotype control Ab; LDB1, anti-LDB1 Ab. Statistical significance was assessed by two-tailed Student's t -test. ∗ P < 0.05. All data are presented as the mean ± SEM.
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    Santa Cruz Biotechnology c membranes
    The LDB1 complex containing LMO2 and GATA1 directly enhances the transcription of the Bcl11a gene. ( A-E ) ChIP-qPCR assays were performed to assess the occupancy of putative LDB1 complex component proteins, including LDB1, LMO2, GATA1, <t>TAL1,</t> and E2A, at the Bcl11a locus in E14.5 WT and KO FLCs. n = 3. Control, isotype control Ab; LDB1, anti-LDB1 Ab; LMO2, anti-LMO2 Ab; GATA1, anti-GATA1 Ab; <t>TAL1,</t> <t>anti-TAL1</t> Ab, E2A, anti-E2A Ab; WT, E14.5 FLCs; KO, E14.5 KO FLCs. Statistical significance was assessed by one-way ANOVA with Tukey HSD analysis. Mean values not sharing the same superscript letter ( a, b ) differ significantly at P < 0.05. ( F and G ) Dual-luciferase reporter assays were performed using the 210 bp region covering primer #3 ( Bcl11a intron #3) or the 225 bp region covering primer #4 ( Bcl11a intron #4) at Bcl11a locus. The relative luciferase activity of each construct containing either Bcl11a intron #3 or Bcl11a intron #4 was measured in HEK293T cells transfected with the indicated combination of each expression vector encoding Ldb1 , Lmo2 , or Gata1 cDNA. The schematic diagrams of each cloned enhancer region ( F ) and the results of the luciferase reporter assays ( G ) are presented. Ldb1 , expression vector encoding Ldb1 cDNA; Lmo2 , expression vector encoding Lmo2 cDNA; Gata1 , expression vector encoding Gata1 cDNA; ◯, transfected cells; ☓, untransfected cells. n = 5. Statistical significance was assessed by one-way ANOVA with Tukey HSD analysis. Mean values not sharing the same superscript letter ( a, b, c ) differ significantly at P < 0.05. ( H and I ) ChIP-qPCR assays were performed to assess LDB1 occupancy at the human BCL11A locus in K562 cells. The locations of each indicated primer set within the BCL11A locus are shown in the schematic diagram ( H ) along with the corresponding ChIP-qPCR results ( I ). n = 3. Mock K562, empty vector transfected K562 cells; KO K562, human LDB1 knockout K562 cells; Control, isotype control Ab; LDB1, anti-LDB1 Ab. Statistical significance was assessed by two-tailed Student's t -test. ∗ P < 0.05. All data are presented as the mean ± SEM.
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    Santa Cruz Biotechnology anti rat igg hrp
    The LDB1 complex containing LMO2 and GATA1 directly enhances the transcription of the Bcl11a gene. ( A-E ) ChIP-qPCR assays were performed to assess the occupancy of putative LDB1 complex component proteins, including LDB1, LMO2, GATA1, <t>TAL1,</t> and E2A, at the Bcl11a locus in E14.5 WT and KO FLCs. n = 3. Control, isotype control Ab; LDB1, anti-LDB1 Ab; LMO2, anti-LMO2 Ab; GATA1, anti-GATA1 Ab; <t>TAL1,</t> <t>anti-TAL1</t> Ab, E2A, anti-E2A Ab; WT, E14.5 FLCs; KO, E14.5 KO FLCs. Statistical significance was assessed by one-way ANOVA with Tukey HSD analysis. Mean values not sharing the same superscript letter ( a, b ) differ significantly at P < 0.05. ( F and G ) Dual-luciferase reporter assays were performed using the 210 bp region covering primer #3 ( Bcl11a intron #3) or the 225 bp region covering primer #4 ( Bcl11a intron #4) at Bcl11a locus. The relative luciferase activity of each construct containing either Bcl11a intron #3 or Bcl11a intron #4 was measured in HEK293T cells transfected with the indicated combination of each expression vector encoding Ldb1 , Lmo2 , or Gata1 cDNA. The schematic diagrams of each cloned enhancer region ( F ) and the results of the luciferase reporter assays ( G ) are presented. Ldb1 , expression vector encoding Ldb1 cDNA; Lmo2 , expression vector encoding Lmo2 cDNA; Gata1 , expression vector encoding Gata1 cDNA; ◯, transfected cells; ☓, untransfected cells. n = 5. Statistical significance was assessed by one-way ANOVA with Tukey HSD analysis. Mean values not sharing the same superscript letter ( a, b, c ) differ significantly at P < 0.05. ( H and I ) ChIP-qPCR assays were performed to assess LDB1 occupancy at the human BCL11A locus in K562 cells. The locations of each indicated primer set within the BCL11A locus are shown in the schematic diagram ( H ) along with the corresponding ChIP-qPCR results ( I ). n = 3. Mock K562, empty vector transfected K562 cells; KO K562, human LDB1 knockout K562 cells; Control, isotype control Ab; LDB1, anti-LDB1 Ab. Statistical significance was assessed by two-tailed Student's t -test. ∗ P < 0.05. All data are presented as the mean ± SEM.
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    Santa Cruz Biotechnology anti kshv lana
    KDM5A/B associate with KSHV <t>LANA</t> and modulate its functions. (A, B) Average profile plot (A) and heatmap (B) showing the ChIP-seq enrichment pattern of RNAP1, LANA (KSHV), RTA (KSHV), and H3K4me3 at promoter regions of immune-responsive genes (IRGs) were presented, which were generated from re-analysis of the public ChIP-seq dataset (GSE202670). (C, D) BCBL-1 (C) or iSLK.BAC16 (D) cells were collected for protein IP of KSHV LANA, followed by protein immunoblotting to quantify the co-IPed KDM5A/B protein. (E, F) iSLK.BAC16 cells were subjected to protein immunofluorescence followed by confocal microscopy imaging to visualize the co-localization of KSHV LANA protein with KDM5A (E) or KDM5B (F). (G, H) iSLK.BAC16 cells were transiently transfected with siRNAs targeting KDM5A/B for 3 days. Cells were collected for chromatin immunoprecipitation (ChIP) of KSHV LANA protein using its antibody or the control rat IgG, followed by qPCR to quantify the binding of LANA at the promoter regions of KSHV RTA (G) or host IRGs (H). Results were calculated from three independent experiments and presented as Mean ± SD (**** P < 0.0001; two-way ANOVA).
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    Santa Cruz Biotechnology santa cruz biotechnology cat sc 2026
    KDM5A/B associate with KSHV <t>LANA</t> and modulate its functions. (A, B) Average profile plot (A) and heatmap (B) showing the ChIP-seq enrichment pattern of RNAP1, LANA (KSHV), RTA (KSHV), and H3K4me3 at promoter regions of immune-responsive genes (IRGs) were presented, which were generated from re-analysis of the public ChIP-seq dataset (GSE202670). (C, D) BCBL-1 (C) or iSLK.BAC16 (D) cells were collected for protein IP of KSHV LANA, followed by protein immunoblotting to quantify the co-IPed KDM5A/B protein. (E, F) iSLK.BAC16 cells were subjected to protein immunofluorescence followed by confocal microscopy imaging to visualize the co-localization of KSHV LANA protein with KDM5A (E) or KDM5B (F). (G, H) iSLK.BAC16 cells were transiently transfected with siRNAs targeting KDM5A/B for 3 days. Cells were collected for chromatin immunoprecipitation (ChIP) of KSHV LANA protein using its antibody or the control rat IgG, followed by qPCR to quantify the binding of LANA at the promoter regions of KSHV RTA (G) or host IRGs (H). Results were calculated from three independent experiments and presented as Mean ± SD (**** P < 0.0001; two-way ANOVA).
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    Santa Cruz Biotechnology rabbit igg
    KDM5A/B associate with KSHV <t>LANA</t> and modulate its functions. (A, B) Average profile plot (A) and heatmap (B) showing the ChIP-seq enrichment pattern of RNAP1, LANA (KSHV), RTA (KSHV), and H3K4me3 at promoter regions of immune-responsive genes (IRGs) were presented, which were generated from re-analysis of the public ChIP-seq dataset (GSE202670). (C, D) BCBL-1 (C) or iSLK.BAC16 (D) cells were collected for protein IP of KSHV LANA, followed by protein immunoblotting to quantify the co-IPed KDM5A/B protein. (E, F) iSLK.BAC16 cells were subjected to protein immunofluorescence followed by confocal microscopy imaging to visualize the co-localization of KSHV LANA protein with KDM5A (E) or KDM5B (F). (G, H) iSLK.BAC16 cells were transiently transfected with siRNAs targeting KDM5A/B for 3 days. Cells were collected for chromatin immunoprecipitation (ChIP) of KSHV LANA protein using its antibody or the control rat IgG, followed by qPCR to quantify the binding of LANA at the promoter regions of KSHV RTA (G) or host IRGs (H). Results were calculated from three independent experiments and presented as Mean ± SD (**** P < 0.0001; two-way ANOVA).
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    Image Search Results


    The LDB1 complex containing LMO2 and GATA1 directly enhances the transcription of the Bcl11a gene. ( A-E ) ChIP-qPCR assays were performed to assess the occupancy of putative LDB1 complex component proteins, including LDB1, LMO2, GATA1, TAL1, and E2A, at the Bcl11a locus in E14.5 WT and KO FLCs. n = 3. Control, isotype control Ab; LDB1, anti-LDB1 Ab; LMO2, anti-LMO2 Ab; GATA1, anti-GATA1 Ab; TAL1, anti-TAL1 Ab, E2A, anti-E2A Ab; WT, E14.5 FLCs; KO, E14.5 KO FLCs. Statistical significance was assessed by one-way ANOVA with Tukey HSD analysis. Mean values not sharing the same superscript letter ( a, b ) differ significantly at P < 0.05. ( F and G ) Dual-luciferase reporter assays were performed using the 210 bp region covering primer #3 ( Bcl11a intron #3) or the 225 bp region covering primer #4 ( Bcl11a intron #4) at Bcl11a locus. The relative luciferase activity of each construct containing either Bcl11a intron #3 or Bcl11a intron #4 was measured in HEK293T cells transfected with the indicated combination of each expression vector encoding Ldb1 , Lmo2 , or Gata1 cDNA. The schematic diagrams of each cloned enhancer region ( F ) and the results of the luciferase reporter assays ( G ) are presented. Ldb1 , expression vector encoding Ldb1 cDNA; Lmo2 , expression vector encoding Lmo2 cDNA; Gata1 , expression vector encoding Gata1 cDNA; ◯, transfected cells; ☓, untransfected cells. n = 5. Statistical significance was assessed by one-way ANOVA with Tukey HSD analysis. Mean values not sharing the same superscript letter ( a, b, c ) differ significantly at P < 0.05. ( H and I ) ChIP-qPCR assays were performed to assess LDB1 occupancy at the human BCL11A locus in K562 cells. The locations of each indicated primer set within the BCL11A locus are shown in the schematic diagram ( H ) along with the corresponding ChIP-qPCR results ( I ). n = 3. Mock K562, empty vector transfected K562 cells; KO K562, human LDB1 knockout K562 cells; Control, isotype control Ab; LDB1, anti-LDB1 Ab. Statistical significance was assessed by two-tailed Student's t -test. ∗ P < 0.05. All data are presented as the mean ± SEM.

    Journal: Redox Biology

    Article Title: LDB1 represses fetal hemoglobin expression by enhancing BCL11A transcription

    doi: 10.1016/j.redox.2026.104070

    Figure Lengend Snippet: The LDB1 complex containing LMO2 and GATA1 directly enhances the transcription of the Bcl11a gene. ( A-E ) ChIP-qPCR assays were performed to assess the occupancy of putative LDB1 complex component proteins, including LDB1, LMO2, GATA1, TAL1, and E2A, at the Bcl11a locus in E14.5 WT and KO FLCs. n = 3. Control, isotype control Ab; LDB1, anti-LDB1 Ab; LMO2, anti-LMO2 Ab; GATA1, anti-GATA1 Ab; TAL1, anti-TAL1 Ab, E2A, anti-E2A Ab; WT, E14.5 FLCs; KO, E14.5 KO FLCs. Statistical significance was assessed by one-way ANOVA with Tukey HSD analysis. Mean values not sharing the same superscript letter ( a, b ) differ significantly at P < 0.05. ( F and G ) Dual-luciferase reporter assays were performed using the 210 bp region covering primer #3 ( Bcl11a intron #3) or the 225 bp region covering primer #4 ( Bcl11a intron #4) at Bcl11a locus. The relative luciferase activity of each construct containing either Bcl11a intron #3 or Bcl11a intron #4 was measured in HEK293T cells transfected with the indicated combination of each expression vector encoding Ldb1 , Lmo2 , or Gata1 cDNA. The schematic diagrams of each cloned enhancer region ( F ) and the results of the luciferase reporter assays ( G ) are presented. Ldb1 , expression vector encoding Ldb1 cDNA; Lmo2 , expression vector encoding Lmo2 cDNA; Gata1 , expression vector encoding Gata1 cDNA; ◯, transfected cells; ☓, untransfected cells. n = 5. Statistical significance was assessed by one-way ANOVA with Tukey HSD analysis. Mean values not sharing the same superscript letter ( a, b, c ) differ significantly at P < 0.05. ( H and I ) ChIP-qPCR assays were performed to assess LDB1 occupancy at the human BCL11A locus in K562 cells. The locations of each indicated primer set within the BCL11A locus are shown in the schematic diagram ( H ) along with the corresponding ChIP-qPCR results ( I ). n = 3. Mock K562, empty vector transfected K562 cells; KO K562, human LDB1 knockout K562 cells; Control, isotype control Ab; LDB1, anti-LDB1 Ab. Statistical significance was assessed by two-tailed Student's t -test. ∗ P < 0.05. All data are presented as the mean ± SEM.

    Article Snippet: Sheared chromatin was immunoprecipitated using 2 μg of the following Abs per sample: anti-LDB1 (Santa Cruz Biotechnology sc-365074) and its isotype control (R&D Systems MAB004), anti-GATA1 (Santa Cruz Biotechnology sc-265) and its isotype control (Santa Cruz Biotechnology, Inc. sc-3883), anti-TAL1 (Santa Cruz Biotechnology sc-393287), anti-LMO2 (Santa Cruz Biotechnology sc-65736), anti-E2A (Santa Cruz Biotechnology sc-416) and their isotype control (Thermo Fisher Scientific 14-4714-85).

    Techniques: ChIP-qPCR, Control, Luciferase, Activity Assay, Construct, Transfection, Expressing, Plasmid Preparation, Clone Assay, Knock-Out, Two Tailed Test

    KDM5A/B associate with KSHV LANA and modulate its functions. (A, B) Average profile plot (A) and heatmap (B) showing the ChIP-seq enrichment pattern of RNAP1, LANA (KSHV), RTA (KSHV), and H3K4me3 at promoter regions of immune-responsive genes (IRGs) were presented, which were generated from re-analysis of the public ChIP-seq dataset (GSE202670). (C, D) BCBL-1 (C) or iSLK.BAC16 (D) cells were collected for protein IP of KSHV LANA, followed by protein immunoblotting to quantify the co-IPed KDM5A/B protein. (E, F) iSLK.BAC16 cells were subjected to protein immunofluorescence followed by confocal microscopy imaging to visualize the co-localization of KSHV LANA protein with KDM5A (E) or KDM5B (F). (G, H) iSLK.BAC16 cells were transiently transfected with siRNAs targeting KDM5A/B for 3 days. Cells were collected for chromatin immunoprecipitation (ChIP) of KSHV LANA protein using its antibody or the control rat IgG, followed by qPCR to quantify the binding of LANA at the promoter regions of KSHV RTA (G) or host IRGs (H). Results were calculated from three independent experiments and presented as Mean ± SD (**** P < 0.0001; two-way ANOVA).

    Journal: bioRxiv

    Article Title: Inhibition of KDM5A/B promotes antitumor innate immune responses in HHV-8/KSHV-positive B-cell lymphomas

    doi: 10.64898/2026.01.28.702275

    Figure Lengend Snippet: KDM5A/B associate with KSHV LANA and modulate its functions. (A, B) Average profile plot (A) and heatmap (B) showing the ChIP-seq enrichment pattern of RNAP1, LANA (KSHV), RTA (KSHV), and H3K4me3 at promoter regions of immune-responsive genes (IRGs) were presented, which were generated from re-analysis of the public ChIP-seq dataset (GSE202670). (C, D) BCBL-1 (C) or iSLK.BAC16 (D) cells were collected for protein IP of KSHV LANA, followed by protein immunoblotting to quantify the co-IPed KDM5A/B protein. (E, F) iSLK.BAC16 cells were subjected to protein immunofluorescence followed by confocal microscopy imaging to visualize the co-localization of KSHV LANA protein with KDM5A (E) or KDM5B (F). (G, H) iSLK.BAC16 cells were transiently transfected with siRNAs targeting KDM5A/B for 3 days. Cells were collected for chromatin immunoprecipitation (ChIP) of KSHV LANA protein using its antibody or the control rat IgG, followed by qPCR to quantify the binding of LANA at the promoter regions of KSHV RTA (G) or host IRGs (H). Results were calculated from three independent experiments and presented as Mean ± SD (**** P < 0.0001; two-way ANOVA).

    Article Snippet: The following antibodies were used in this study: anti-KDM5A (Active Motif, Cat# 91211); anti-KDM5B (Bethyl Laboratories, Cat# A301-813A); ant-KDM5C (Bethyl Laboratories, Cat# A301-034A); anti-KSHV K8.1 (Santa Cruz Biotechnology, Cat# sc-65446); anti-EBV EBNA1 (Santa Cruz Biotechnology, Cat# sc-81581); anti-GAPDH (Santa Cruz Biotechnology, Cat# sc-47724); normal rat IgG (Santa Cruz Biotechnology, Cat# sc-2026); anti-KSHV LANA (Advanced Biotechnologies, Cat# 13-210-100); anti-FLAG M2 (Sigma-Aldrich, Cat# F1804); anti-CD3-FITC (Miltenyi Biotec, Cat# 130-113-690); anti-CD19-PE (Santa Cruz Biotechnology, Cat# 130-113-731); anti-CD20 (BioLegend, Cat# 382802); anti-mouse HRP-linked (Cell Signaling Technology, Cat#7076S) and anti-rabbit HRP-linked (Santa Cruz Biotechnology, Cat# 7074S) antibodies; isotype control IgG including rabbit IgG (Santa Cruz Biotechnology, Cat# 3900S), mouse IgG 1 (Santa Cruz Biotechnology, Cat# 5415S), mouse IgG 2a (Santa Cruz Biotechnology, Cat# 61656S) and mouse IgG 2b (Santa Cruz Biotechnology, Cat# 53484S).

    Techniques: ChIP-sequencing, Generated, Western Blot, Immunofluorescence, Confocal Microscopy, Imaging, Transfection, Chromatin Immunoprecipitation, Control, Binding Assay